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Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia
Manning, Jessica E..
Bohl, Jennifer A..
Lay, Sreyngim.
Chea, Sophana.
Sovann, Ly.
Sengdoeurn, Yi.
Heng, Seng.
Vuthy, Chan.
Kalantar, Katrina.
Ahyong, Vida.
Tan, Michelle.
Sheu, Jonathan.
Tato, Cristina M..
DeRisi, Joseph L..
Baril, Laurence.
Duong, Veasna.
Dussart, Philippe.
Karlsson, Erik A..
Acceso Abierto
Atribución-NoComercial-SinDerivadas
10.1101/2020.03.02.968818
Abstract Rapid production and publication of pathogen genome sequences during emerging disease outbreaks provide crucial public health information. In resource-limited settings, especially near an outbreak epicenter, conventional deep sequencing or bioinformatics are often challenging. Here we successfully used metagenomic next generation sequencing on an iSeq100 Illumina platform paired with an open-source bioinformatics pipeline to quickly characterize Cambodia’s first case of COVID-2019.
www.biorxiv.org
2020
Artículo
https://www.biorxiv.org/content/10.1101/2020.03.02.968818v1.full.pdf
Inglés
VIRUS RESPIRATORIOS
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