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Scaling diagnostics in times of COVID-19: Rapid prototyping of 3D-printed water circulators for Loop-mediated Isothermal Amplification (LAMP) and detection of SARS-CoV-2 virus
Everardo Gonzalez-Gonzalez.
Itzel Montserrat Lara-Mayorga.
Andres Garcia-Rubio.
Carlos Ezio Garciamendez-Mijares.
Gilberto Emilio Guerra-Alvarez.
German Garcia-Martinez.
Juan Andres Aguayo-Hernandez.
Yu-Shrike Zhang.
Sergio Omar Martinez-Chapa.
Grissel Trujillo-de Santiago.
Mario Moises Alvarez.
Acceso Abierto
Atribución-NoComercial-SinDerivadas
10.1101/2020.04.09.20058651
By the first week of April 2020, more than 1,500,000 positive cases of COVID-19 and more than 50,000 deaths had been officially reported worldwide. While developed countries such as the USA, Italy, England, France, Spain, and Germany struggle to mitigate the propagation of SARS-CoV-2, the COVID-19 pandemic arrived in Latin America, India, and Africa -territories in which the mounted infrastructure for diagnosis is greatly underdeveloped. An actual epidemic emergency does not provide the required timeframe for testing new diagnostic strategies; therefore, the first line of response must be based on commercially and readily available resources. Here, we demonstrate the combined use of a three-dimensional (3D)-printed incubation chamber for commercial Eppendorf PCR tubes, and a colorimetric embodiment of a loop-mediated isothermal amplification (LAMP) reaction scheme for the detection of SARS-CoV-2 nucleic acids. We used this strategy to detect and amplify SARS-CoV-2 DNA sequences using a set of in-house designed initiators that target regions encoding the N protein. We were able to detect and amplify SARS-CoV-2 nucleic acids in the range of ~625 to 2 X 105 DNA copies by this straightforward method. The accuracy and simplicity of this diagnostics strategy may provide a cost-efficient and reliable alternative for use during the COVID-19 pandemics, particularly in underdeveloped regions were the availability of RT-qPCR instruments may be limited. Moreover, the portability, ease of use, and reproducibility of this strategy make it a reliable alternative for deployment of point-of-care SARS-CoV-2 detection efforts during the pandemics.
www.medrxiv.org
2020
Artículo
https://www.medrxiv.org/content/10.1101/2020.04.09.20058651v1.full.pdf
Inglés
VIRUS RESPIRATORIOS
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